23 January 2025 The Future is the Product of the Past

An Anthropologist’s life work uncovers the first ancient DNA from the Swahili Civilization

Chapurukha Kusimba, an anthropologist at the University of South Florida, has uncovered the first ancient DNA from the Swahili Civilization, prosperous trading states on the East African coast dating back to the 7th century.

From Kenya to Mozambique, Chapurukha Kusimba, a USF professor of anthropology, dedicated 40 years to studying the ancestry of those who built the civilizations.

The urban peoples of the Swahili coast traded across eastern Africa and the Indian Ocean and were among the first practitioners of Islam among sub-Saharan people.

A common language of African origin (Kiswahili), a shared dominant religion (Islam), and a geographic distribution in coastal towns and villages were the defining characteristics of the Swahili culture of eastern Africa during the Middle Ages and Early Modern Period beginning in the seventh century AD.

Published in Nature, this work examines the DNA of 80 individuals from as long as 800 years ago – making it the first ancient DNA uncovered from the Swahili Civilization. 

The site of tombs along the Swahili Coast
The site of tombs along the Swahili Coast

“This research has been my life’s work – this journey to recover the past of the Swahili and restore them to rightful citizenship,” Kusimba said. “These findings bring out the African contributions, and indeed, the Africanness of the Swahili, without marginalizing the Persian and Indian connection.”

As part of his decades-long research, Kusimba, a Kenya native, spent time with the people of Swahili to gain their trust before receiving their approval to complete cemetery excavations. To respect the remains, Kusimba finished the sampling and re-burial process all in one season.

Working alongside Harvard geneticists David Reich and Esther Brielle and corresponding authors, Jeff Fleisher from Rice University and Stephanie Wynne-Jones from University of York, Kusimba discovered the ancestry of the people analyzed was both African and Asian. The DNA revealed a pattern: the overwhelming majority of male-line ancestors came from Asia, while the female-line ancestors came from Africa.

Despite their intermarrying, descendants spoke an African language, not an Asian one. This led researchers to conclude that African women had great influence on the formation of the culture. So much so, the villages were established prior to the colonialism from Asia, making women the primary holders of economic and social power.

The findings challenge centuries-old narratives – constructed by other African natives – that suggest wealthier Swahilis did not have real ancestral connections to Asia and only claimed they did in order to minimize their African heritage to obtain higher social status and cultural affinities. Despite the vital role Swahilis played in trade between Africa and the rest of the Indian Ocean world for more than 2,500 years, Kusimba’s previous work from the 1990s documented the poor treatment of Swahili descent communities as a result of the narratives.

University of South Florida anthropologist Chapurukha Kusimba (right) sits aboard a Swahili coastal boat beside longtime colleague Mohamed Mchulla Mohamed, curator emeritus of the National Museums of Kenya. Photo: Chapurukha Kusimba, University of South Florida
University of South Florida anthropologist Chapurukha Kusimba (right) sits aboard a Swahili coastal boat beside longtime colleague Mohamed Mchulla Mohamed, curator emeritus of the National Museums of Kenya. Photo: Chapurukha Kusimba, University of South Florida

“I believe I was among many scholars who had worked on the Kenyan coast who did not think that the story from Persia was much more than that – a story,” said Dillon Mahoney, USF assistant professor and volunteer who works with recently resettled Swahili-speaking refugees.

“This research is not only significant for its scientific achievement, but it tells us that we must take non-Western and oral histories into full consideration, because our ancestry research is tending to support such stories, even if generations of academics have largely viewed such stories with skepticism.”

The results from this work prove Asians and African ancestors began intermarrying at least 1,000 years ago, but long after Africans had already established their villages. 

“Our results do not provide simple validation for the narratives previously advanced in archaeological, historical or political circles,” Kusimba said. “Instead, they contradict and complicate those narratives.”

By challenging and overturning the narratives imposed from the outside for political and economic ends, this research brings peace and restores pride to the millions of people who identify as Swahili today. Up until now, it has been difficult to determine how people who identify as Swahili today relate to people of the early modern Swahili culture.

University of South Florida

doi.org/10.1038/s41586-023-05754

Related Articles

Celtic gold rainbow cup coin discovered in Bavaria

12 September 2023

12 September 2023

An extremely rare “rainbow cup” Celtic coin dated to the second or first century B.C. has been discovered next to...

A unique golden sun bowl was discovered during an archaeological survey in Ebreichsdorf, Austria

3 October 2021

3 October 2021

A golden sun bowl and several hundred bronze objects were discovered during archaeological excavations in a prehistoric settlement in today’s...

Severed right hands reveal Trophy-Taking practices in Ancient Egypt

2 April 2023

2 April 2023

Twelve severed hands were found in Egypt as part of a horrifying “trophy-taking” practice that was just made revealed by...

Medieval gold ‘lynx’ earrings from Ani Ruins

29 December 2022

29 December 2022

A pair of lynx-shaped gold earrings have been unearthed near the ruins of Ani, the once great metropolis known as...

King Stephen 12th Century rare penny hoard found near Wymondham

21 November 2023

21 November 2023

An unnamed metal detectorist recently discovered a scarce collection of 12th-century silver pennies near the village of Wymondham in the...

3000 years old wooden wishing well discovered in Germany

7 January 2023

7 January 2023

In the town of Germering, in the Germany state of Bavaria, archaeologists have unearthed the remains of a well-preserved Bronze...

Archaeologists Discovered Over 500 Ancient Coins and A Gold Template for Making jewelry in Bulgaria

17 August 2024

17 August 2024

In Plovdiv, in southern Bulgaria, archaeologists have discovered over 500 ancient coins and a gold template for making jewelry from...

The Sedgeford Anglo-Saxon malting complex may be the largest ever discovered in the UK

23 July 2023

23 July 2023

As archaeological excavations resume on a hill in Sedgeford, near Hunstanton, a seaside town in Norfolk, England, now more evidence...

Research Shows Early North Americans Made Eyed Needles from Fur-Bearers

3 December 2024

3 December 2024

Archaeologists from the University of Wyoming have found bone 13,000-year-old eyed needles crafted from the bones of various furry animals....

Archaeologists say 12,000-year-old flutes discovered in northern Israel may have been used to lure falcons

9 June 2023

9 June 2023

New research reveals that about 12,000 years ago, in northern Israel, humans turned the bones of small birds into instruments...

Iconic Double Arch collapsed after an ancient pyramid in America, Tribes Link Fall With ‘Bad Omen’

10 August 2024

10 August 2024

Two ancient North American structures collapsed within just nine days of one another. The iconic Double Arch, also known as...

A marble slab with an inscription from the 2nd century was discovered during excavations in Bulgaria

18 October 2023

18 October 2023 3

Archaeologists discovered a 1,900-year-old marble slab bearing an ancient Greek inscription in the Roman Baths of Hisarya, a small resort...

The researchers unearthed the earliest evidence of warfare and organized arming in the Southern Levant

28 November 2023

28 November 2023 1

Israel Antiquities Authority researchers have unearthed the earliest evidence of warfare and organized arming in the Southern Levant, dating back...

Ruins of China’s earliest state academy found in east China

21 February 2022

21 February 2022

The ruins of ancient China‘s first government-run institution of higher learning, built in 374 BC, have been discovered in the...

Roman-era structures unearthed in northwestern Turkiye dam site rescue excavations

18 May 2024

18 May 2024

Rescue excavations at the Reşitköy Dam site in the northwestern Turkiye province of Balıkesir have unearthed Roman structures, including a...